Cleared-tissue direct-view oblique plane microscopy

Welcome! This website describes cleared-tissue direct-view oblique plane microscopy (CtDvOPM), developed at the MRC Laboratory of Molecular Biology, Cambridge, UK, and described in the manuscript index-agnostic oblique plane light sheet microscopy of centimetre-scale cleared tissues at subcellular resolution.

An extension of our original direct-view oblique plane microscopy approach, CtDvOPM is an index-agnostic approach for rapid, volumetric imaging of cleared tissues at subcellular resolution. In the current implementation, samples as large as 1680 mm3 can be imaged at 3.8 μm (XY) by 13.6 μm resolution (Z), with a simple modification providing 2 μm lateral resolution.

This website provides details of the hardware and software used, including an interactive CAD render and parts list. Example images are shown below at 1080p resolution — please click on them to view full-size images.



Example images

Mouse kidney cleared using the REPLICA protocol. Aquaporin 2 is shown in cyan and CD105 in magenta. Mouse female reproductive tract cleared using the MACS protocol and immunostained for PGP9.5. Hair organoid cleared using the iDISCO protocol. Adult mouse brain cleared using the OptiMuS-prime protocol. Displayed signal is a combination of beta III tubulin and background autofluorescence / background staining. Mouse gut cleared using the ECi protocol. Hairy chimpanzee skin organoid cleared using the iDISCO protocol and immunostained for neurofilament H. Mouse lung cleared using the MACS protocol. Displayed signal is a combination of beta III tubulin staining and autofluorescence. Mouse kidney cleared using the CUBIC protocol. Mouse cerebellum cleared using the CUBIC protocol and immunostained for beta III tubulin (orange) and calbindin (cyan).